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Showing posts with label mtDNA. Show all posts
Showing posts with label mtDNA. Show all posts

Saturday, November 23, 2019

There Used to be Nine Species of Human. What Happened to Them?

The disappearance of these other species resembles a mass extinction. But there’s no obvious environmental catastrophe, except for the rise of Homo Sapiens

There is a lot of imagination in anthropology. Take what you want from this, but remember, these theories will continue to evolve for some time.

The spread of modern humans out of Africa has caused a sixth mass extinction, a greater than 40,000-year event extending from the disappearance of Ice Age mammals to the destruction of rainforests by civilisation today.Getty Images
The Conversation

Nine human species walked the Earth 300,000 years ago. Now there is just one. The Neanderthals, Homo Neanderthalensis, were stocky hunters adapted to Europe’s cold steppes. The related Denisovans inhabited Asia, while the more primitive Homo Erectus lived in Indonesia, and Homo Rhodesiensis in central Africa.

Several short, small-brained species survived alongside them: Homo Naledi in South Africa, Homo Luzonensis in the Philippines, Homo Floresiensis (“hobbits”) in Indonesia, and the mysterious Red Deer Cave People in China. Given how quickly we’re discovering new species, more are likely waiting to be found.

By 10,000 years ago, they were all gone. The disappearance of these other species resembles a mass extinction. But there’s no obvious environmental catastrophe – volcanic eruptions, climate change, asteroid impact – driving it. Instead, the extinctions’ timing suggests they were caused by the spread of a new species, evolving 260,000-350,000 years ago in Southern Africa: Homo sapiens.

Unless there was a global flood!

The spread of modern humans out of Africa has caused a sixth mass extinction, a greater than 40,000-year event extending from the disappearance of Ice Age mammals to the destruction of rainforests by civilisation today. 

But were other humans the first casualties?

We are a uniquely dangerous species. We hunted wooly mammoths, ground sloths and moas to extinction. We destroyed plains and forests for farming, modifying over half the planet’s land area. We altered the planet’s climate. But we are most dangerous to other human populations, because we compete for resources and land.

History is full of examples of people warring, displacing and wiping out other groups over territory, from Rome’s destruction of Carthage, to the American conquest of the West and the British colonisation of Australia. There have also been recent genocides and ethnic cleansing in Bosnia, Rwanda, Iraq, Darfur and Myanmar. Like language or tool use, a capacity for and tendency to engage in genocide is arguably an intrinsic, instinctive part of human nature. There’s little reason to think that early Homo sapiens were less territorial, less violent, less intolerant – less human.

History is full of examples of people warring, displacing and wiping out other groups over territory

Optimists have painted early hunter-gatherers as peaceful, noble savages, and have argued that our culture, not our nature, creates violence. But field studies, historical accounts, and archaeology all show that war in primitive cultures was intense, pervasive and lethal. Neolithic weapons such as clubs, spears, axes and bows, combined with guerrilla tactics like raids and ambushes, were devastatingly effective. Violence was the leading cause of death among men in these societies, and wars saw higher casualty levels per person than World Wars I and II.

Old bones and artefacts show this violence is ancient. The 9,000-year-old Kennewick Man, from North America, has a spear point embedded in his pelvis. The 10,000-year-old Nataruk site in Kenya documents the brutal massacre of at least 27 men, women, and children.

It’s unlikely that the other human species were much more peaceful. The existence of cooperative violence in male chimps suggests that war predates the evolution of humans. Neanderthal skeletons show patterns of trauma consistent with warfare. But sophisticated weapons likely gave Homo sapiens a military advantage. The arsenal of early Homo sapiens probably included projectile weapons like javelins and spear-throwers, throwing sticks and clubs.

Complex tools and culture would also have helped us efficiently harvest a wider range of animals and plants, feeding larger tribes, and giving our species a strategic advantage in numbers.

The ultimate weapon

But cave paintings, carvings, and musical instruments hint at something far more dangerous: a sophisticated capacity for abstract thought and communication. The ability to cooperate, plan, strategise, manipulate and deceive may have been our ultimate weapon.

The incompleteness of the fossil record makes it hard to test these ideas. But in Europe, the only place with a relatively complete archaeological record, fossils show that within a few thousand years of our arrival , Neanderthals vanished. Traces of Neanderthal DNA in some Eurasian people prove we didn’t just replace them after they went extinct. We met, and we mated.

Elsewhere, DNA tells of other encounters with archaic humans. East Asian, Polynesian and Australian groups have DNA from Denisovans. DNA from another species, possibly Homo erectus, occurs in many Asian people. African genomes show traces of DNA from yet another archaic species. The fact that we interbred with these other species proves that they disappeared only after encountering us.

But why would our ancestors wipe out their relatives, causing a mass extinction – or, perhaps more accurately, a mass genocide?

The answer lies in population growth. Humans reproduce exponentially, like all species. Unchecked, we historically doubled our numbers every 25 years. And once humans became cooperative hunters, we had no predators. Without predation controlling our numbers, and little family planning beyond delayed marriage and infanticide, populations grew to exploit the available resources.

Further growth, or food shortages caused by drought, harsh winters or overharvesting resources would inevitably lead tribes into conflict over food and foraging territory. Warfare became a check on population growth, perhaps the most important one.

Our elimination of other species probably wasn’t a planned, coordinated effort of the sort practised by civilisations, but a war of attrition. The end result, however, was just as final. Raid by raid, ambush by ambush, valley by valley, modern humans would have worn down their enemies and taken their land.

Yet the extinction of Neanderthals, at least, took a long time – thousands of years. This was partly because early Homo sapiens lacked the advantages of later conquering civilisations: large numbers, supported by farming, and epidemic diseases like smallpox, flu, and measles that devastated their opponents. But while Neanderthals lost the war, to hold on so long they must have fought and won many battles against us, suggesting a level of intelligence close to our own.

Today we look up at the stars and wonder if we’re alone in the universe. In fantasy and science fiction, we wonder what it might be like to meet other intelligent species, like us, but not us. It’s profoundly sad to think that we once did, and now, because of it, they’re gone.

Nick Longrich, Senior Lecturer, Paleontology and Evolutionary Biology, University of Bath.

Wednesday, February 17, 2016

Complex Human DNA Trail Provides Some Interesting Surprises

Neanderthals & humans interbred 100,000 years ago
At least 5 different species of humans found
By Rebecca Morelle, Science Correspondent, BBC News

Neanderthal recreation   Image copyright ELISABETH DAYNES/SCIENCE PHOTO LIBRARY
Neanderthals may have been breeding with modern humans much earlier than was thought

Traces of human DNA found in a Neanderthal genome suggest that we started mixing with our now-extinct relatives 100,000 years ago.

Previously it had been thought that the two species first encountered each other when modern humans left Africa, about 60,000 years ago.

The research is published in the journal Nature.

Dr Sergi Castellano, from the Max Planck Institute for Evolutionary Anthropology, in Germany, said: "It is significant for understanding the history of modern humans and Neanderthals."

The Neanderthal remains were found in a cave in Siberia copyright BENCE VIOLA

The ancient remains of a female Neanderthal, found in a remote cave in the Altai Mountains in Siberia, are the source of these revelations about the sex lives of our ancestors.

A genetic analysis reveals that portions of human DNA lie within her genome, revealing an interspecies mingling that took place 100,000 years ago.

We really don't know how widespread Neanderthals and early modern 
humans might have been in the regions between Arabia and China at this time

Prof Chris Stringer, Natural History Museum

Earlier research suggested that humans started interbreeding with our heavy-browed, stocky relatives when they migrated out of Africa and began to spread around the world.

As they left the continent, they met - and mingled with - the Neanderthals, who lived across Europe and Asia.

Neanderthal genes from these encounters are found in humans today, and recent studies have shown that these portions of DNA play an integral role in everything from our immune system to our propensity to diseases.

But the latest finding of a flow of genes in the opposite direction, from humans to Neanderthals, suggests such mating was happening thousands of years earlier.

It is not yet clear what impact these genes had on Neanderthals. "The functional significance of this is unclear at the moment," said Dr Castellano.

Neanderthal genes in the humans are found in many Europeans and Asian populations Science Photo Library

However, the findings do shed more light on the history of human migration.

At the moment we simply don't know how these matings happened
Prof Chris Stringer, Natural History Museum

If early humans were having sex with Neanderthals 100,000 years ago, then they must have been doing so outside of Africa because our close relatives were not found there. And this means that they had left Africa before the larger dispersal that took place at least 40,000 years later.

This adds to the idea that early forays out of the continent took place. Other recent evidence includes early human fossils found in Skhul and Qafzeh in Israel, and recent research that suggests people were living in China at least 80,000 years ago.

Commenting on the study Prof Chris Stringer, research leader in human origins, from the Natural History Museum in London, said: "I think that anywhere in southern Asia could theoretically have been the location of this early interbreeding, since we really don't know how widespread Neanderthals and early modern humans might have been in the regions between Arabia and China at this time."

He added: "At the moment we simply don't know how these matings happened and the possibilities range from relatively peaceful exchanges of partners, to one group raiding another and stealing females (which happens in chimps and some modern hunter-gatherers), through to adopting abandoned or orphaned babies.

"Eventually, geneticists should be able to show if the transfer of DNA in either direction was mainly via males, females, or about equal in proportion, but it will need a lot more data before that becomes possible."

Altai Mtns, Siberia/Mongolia

The cave in the Altai Mountains of Siberian in the photo above is actually famous for having housed not only Neanderthals and humans, but also another extinct species called Denisovans. Their history just adds a whole nuther level of confusion to the human genome. This from Wikipedia:

Denisovan or Denisova hominin (pronunciation: /dᵻˈniːsəvə/ dɛ-nee-sə-və) is an extinct species of human in the genus Homo. The species is sometimes given the name Homo sp. Altai, and Homo sapiens ssp. Denisova. In March 2010, scientists announced the discovery of a finger bone fragment of a juvenile female who lived about 41,000 years ago, found in the remote Denisova Cave in the Altai Mountains in Siberia, a cave which has also been inhabited by Neanderthals and modern humans. Two teeth belonging to different members of the same population have since been reported. In November 2015, a tooth fossil containing DNA was reported to have been found and studied.

Genetically distinct DNA

Analysis of the mitochondrial DNA (mtDNA) of the finger bone showed it to be genetically distinct from the mtDNAs of Neanderthals and modern humans. Subsequent study of the nuclear genome from this specimen suggests that Denisovans shared a common origin with Neanderthals, that they ranged from Siberia to South-East Asia, and that they lived among and interbred with the ancestors of some modern humans, with about 3% to 5% of the DNA of Melanesians and Aboriginal Australians deriving from Denisovans. 

Yet another human species

DNA discovered in Spain suggests that Denisovans at some point resided in Western Europe, where Neanderthals were previously thought to be the only inhabitants. A comparison with the genome of a Neanderthal from the same cave revealed significant local interbreeding with local Neanderthal DNA representing 17% of the Denisovan genome, while evidence was also detected of interbreeding with an as yet unidentified ancient human lineage.

This probably has nothing to do with the discovery of 'hobbits', another human species, on an island in Indonesia. Consequently, that means that there were at least 5 different humanoid species in existence at some time or another.

Similar analysis of a toe bone discovered in 2011 is underway, while analysis of DNA from two teeth found in layers different from the finger bone revealed an unexpected degree of mtDNA divergence among Denisovans. In 2013, mitochondrial DNA from a 400,000-year-old hominin femur bone from Spain, which had been seen as either Neanderthal or Homo heidelbergensis, was found to be closer to Denisovan mtDNA than to Neanderthal mtDNA.